Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TW91_1144Hypothetical protein. (163 aa)    
Predicted Functional Partners:
TW91_0526
Hypothetical protein.
  
     0.748
TW91_0072
Hypothetical protein.
 
     0.728
TW91_1912
Hypothetical protein.
  
     0.695
TW91_1047
Hypothetical protein.
  
     0.659
TW91_0318
Hypothetical protein.
  
     0.640
TW91_0879
protein-L-isoaspartate O-methyltransferase.
  
     0.636
BamC
Lipoprotein.
 
     0.602
TW91_0746
Putative oxidoreductase.
  
     0.548
TW91_0231
Acetyltransferase, gnat family.
  
     0.532
ftsB
Cell division protein FtsB; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
       0.526
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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