TW91_1175 protein (Neisseria flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TW91_1175

Transcriptional regulatory protein RtcR. (542 aa)

Predicted Functional Partners:

TW91_1176

0.772

TW91_1689

0.649

TW91_1688

0.594

TW91_0991

0.582

TW91_0766

0.549

RpoN

0.501

TW91_1942

0.492

TW91_1941

0.482

TW91_1694

0.471

TW91_1944

0.466

Your Current Organism:

Neisseria flavescens

NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RpoN	TW91_0991	TW91_0990	TW91_0991	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	RNA polymerase sigma-54 factor.	0.994
RpoN	TW91_1175	TW91_0990	TW91_1175	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Transcriptional regulatory protein RtcR.	0.501
TW91_0766	TW91_1175	TW91_0766	TW91_1175	Integral membrane protein.	Transcriptional regulatory protein RtcR.	0.549
TW91_0766	TW91_1688	TW91_0766	TW91_1688	Integral membrane protein.	Dual specificity protein phosphatase.	0.557
TW91_0766	TW91_1689	TW91_0766	TW91_1689	Integral membrane protein.	Hydrolase, alpha/beta fold family.	0.649
TW91_0766	TW91_1694	TW91_0766	TW91_1694	Integral membrane protein.	Phosphomethylpyrimidine kinase.	0.533
TW91_0991	RpoN	TW91_0991	TW91_0990	RNA polymerase sigma-54 factor.	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.994
TW91_0991	TW91_1175	TW91_0991	TW91_1175	RNA polymerase sigma-54 factor.	Transcriptional regulatory protein RtcR.	0.582
TW91_1175	RpoN	TW91_1175	TW91_0990	Transcriptional regulatory protein RtcR.	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.501
TW91_1175	TW91_0766	TW91_1175	TW91_0766	Transcriptional regulatory protein RtcR.	Integral membrane protein.	0.549
TW91_1175	TW91_0991	TW91_1175	TW91_0991	Transcriptional regulatory protein RtcR.	RNA polymerase sigma-54 factor.	0.582
TW91_1175	TW91_1176	TW91_1175	TW91_1176	Transcriptional regulatory protein RtcR.	TROVE domain protein.	0.772
TW91_1175	TW91_1688	TW91_1175	TW91_1688	Transcriptional regulatory protein RtcR.	Dual specificity protein phosphatase.	0.594
TW91_1175	TW91_1689	TW91_1175	TW91_1689	Transcriptional regulatory protein RtcR.	Hydrolase, alpha/beta fold family.	0.649
TW91_1175	TW91_1694	TW91_1175	TW91_1694	Transcriptional regulatory protein RtcR.	Phosphomethylpyrimidine kinase.	0.471
TW91_1175	TW91_1941	TW91_1175	TW91_1941	Transcriptional regulatory protein RtcR.	Twin-arginine translocation pathway signal.	0.482
TW91_1175	TW91_1942	TW91_1175	TW91_1942	Transcriptional regulatory protein RtcR.	Hypothetical protein.	0.492
TW91_1175	TW91_1944	TW91_1175	TW91_1944	Transcriptional regulatory protein RtcR.	Hypothetical protein.	0.466
TW91_1176	TW91_1175	TW91_1176	TW91_1175	TROVE domain protein.	Transcriptional regulatory protein RtcR.	0.772
TW91_1176	TW91_1688	TW91_1176	TW91_1688	TROVE domain protein.	Dual specificity protein phosphatase.	0.536