Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TW91_1328Branched-chain amino acid transport. (102 aa)    
Predicted Functional Partners:
TW91_1327
AzlC family protein.
 
   
 0.965
TW91_0641
Hypothetical protein.
  
     0.644
TW91_0642
Hypothetical protein.
  
     0.632
rlmB
RNA methyltransferase, TrmH family, group 3; Specifically methylates the ribose of guanosine 2251 in 23S rRNA.
       0.586
TW91_1700
Hypothetical protein.
  
     0.581
TW91_0796
Acetyltransferase, gnat family.
  
     0.577
TW91_1396
Hypothetical protein.
  
     0.561
TW91_1318
Periplasmic protein.
  
     0.558
TW91_1326
PhoH family protein.
       0.555
TW91_1739
O-antigen polymerase family protein.
  
     0.552
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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