Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
TW91_1422ABC transporter, permease protein. (138 aa)    
Predicted Functional Partners:
TW91_1421
ABC transporter, permease protein.
     0.994
TW91_1420
ABC transporter, permease protein.
 
  
 0.940
TW91_0519
ABC transporter, periplasmic substrate-binding protein.
 
  
 0.788
TW91_0336
Oligopeptide/dipeptide transporter, C- region family; Belongs to the ABC transporter superfamily.
 
  
 0.784
TW91_1405
Oligopeptide/dipeptide transporter, C- region family; Belongs to the ABC transporter superfamily.
 
  
 0.782
TW91_0335
Oligopeptide/dipeptide transporter, C- region family.
 
  
 0.767
OppB
Oligopeptide transport system permease protein OppB.
 
   
 0.717
TW91_1418
Cation uptake regulator; Belongs to the Fur family.
       0.530
TW91_1419
CobW/P47K family protein.
       0.530
TW91_1423
Hypothetical protein.
       0.462
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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