Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TW91_1451Inner membrane protein. (171 aa)    
Predicted Functional Partners:
CcoG
Cytochrome c oxidase accessory protein CcoG.
 
    0.783
TW91_1715
Hemerythrin HHE cation binding domain protein.
  
     0.748
TW91_1258
Putative membrane protein.
  
     0.742
TW91_1428
Tetraacyldisaccharide 4'-kinase.
  
     0.733
TW91_0792
Hypothetical protein.
  
     0.696
TW91_1134
Integral membrane protein.
  
     0.694
TW91_1849
Regulator.
  
     0.678
TW91_1491
Hypothetical protein.
  
     0.673
TW91_2007
TPR repeat region family protein.
  
     0.671
TW91_0446
Integral membrane protein.
  
     0.670
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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