Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TW91_1758Hypothetical protein. (201 aa)    
Predicted Functional Partners:
TW91_1757
Hypothetical protein.
 
     0.790
TW91_1318
Periplasmic protein.
  
   0.729
TW91_1710
Hypothetical protein.
  
   
 0.694
TW91_0540
Secreted protein.
  
     0.693
TW91_1700
Hypothetical protein.
  
   0.693
TW91_1759
Hypothetical protein.
       0.671
smg
Hypothetical protein; Belongs to the Smg family.
  
     0.667
TW91_0374
Inner membrane protein.
  
     0.638
TW91_1766
Gram-negative porin.
 
    0.637
PriB
Primosomal replicatioN protein n; Binds single-stranded DNA at the primosome assembly site (PAS).
  
    0.618
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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