Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
TW91_1793Type IV pilus assembly protein. (140 aa)    
Predicted Functional Partners:
TW91_0980
Type IV fimbrial tip adhesin.
 
  
 0.761
TW91_0400
Pilus assembly protein.
 
  
 0.732
TW91_0398
Pilus assembly protein PilP.
  
  
 0.728
TW91_0802
Prepilin-type N-terminal cleavage/methylation domain protein.
  
     0.704
TW91_0399
Pilus assembly protein, PilO.
 
  
 0.702
TW91_0803
Type IV pilus assembly protein PilX.
 
  
 0.682
TW91_0226
LysM domain protein.
  
     0.660
TW91_0397
Fimbrial assembly protein PilQ.
 
   
 0.660
TW91_1408
Pilus biogenesis protein.
  
   
 0.631
TW91_0133
Hypothetical protein; Belongs to the N-Me-Phe pilin family.
 
   
 0.625
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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