Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TW91_1853Tetratricopeptide repeat-containing domain protein. (209 aa)    
Predicted Functional Partners:
hisS
histidine--tRNA ligase.
  
    0.953
TW91_1211
uroporphyrinogen-III synthase.
  
     0.671
der
Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
    0.626
TW91_0314
Stringent starvation protein A.
  
     0.535
GshA
Glutamate--cysteine ligase.
  
    0.522
TW91_1210
HemY protein.
 
     0.513
dsbB
Disulfide bond formation protein; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.
  
     0.502
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
  
     0.498
TW91_1855
Type IIS restriction enzyme R protein.
       0.488
LptF
Permease, YjgP/YjgQ family.
  
     0.475
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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