Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TW91_1930Abcb protein. (265 aa)    
Predicted Functional Partners:
TW91_1931
Nitrate transport ATP-binding protein NrtC.
 
 
 0.997
TW91_1925
Tat pathway signal sequence domain protein.
 
 
 0.993
TW91_1675
Transposase.
  
    0.536
TW91_1928
Hypothetical protein.
       0.512
TW91_1535
Rubredoxin.
     
 0.503
TW91_1924
TonB-dependent receptor domain protein.
 
     0.483
TW91_0010
Transposase.
  
    0.476
msrA
Peptide methionine sulfoxide reductase MsrA/msrB; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
 
   
 0.471
TW91_0718
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
    
   0.460
TW91_0098
GntR-family transcriptional regulator.
 
     0.427
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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