STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LptFPermease, YjgP/YjgQ family. (371 aa)    
Predicted Functional Partners:
LptB
ABC transporter, ATP-binding protein.
   
 0.999
TW91_1988
Permease YjgP/YjgQ.
 
 0.999
TW91_1989
Permease YjgP/YjgQ.
 
 0.996
LptC
Hypothetical protein.
 
 
 0.992
MlaE
ABC transport inner membrane subunit.
     
 0.886
lptD
LPS-assembly protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
 
 0.848
TW91_0740
L-cystine transport system permease protein TcyB.
   
 
  0.836
TW91_0381
ArtM protein.
   
 
  0.768
TW91_1782
Binding-protein-dependent transport system inner membrane protein.
   
 
  0.765
TW91_0380
Polar amino acid ABC transporter, inner membrane subunit.
   
 
  0.745
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.