TW91_1998 protein (Neisseria flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TW91_1998

Hypothetical protein. (144 aa)

Predicted Functional Partners:

TW91_1997

0.542

TW91_0812

0.532

TW91_1996

0.516

TW91_0884

0.486

TW91_1626

0.452

sucD

0.452

sucC

0.446

TW91_0504

0.410

Your Current Organism:

Neisseria flavescens

NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TW91_0504	TW91_1998	TW91_0504	TW91_1998	Putative membrane protein.	Hypothetical protein.	0.410
TW91_0812	TW91_1998	TW91_0812	TW91_1998	Hypothetical protein.	Hypothetical protein.	0.532
TW91_0884	TW91_1998	TW91_0884	TW91_1998	Protein YhbP.	Hypothetical protein.	0.486
TW91_1626	TW91_1998	TW91_1626	TW91_1998	Endonuclease/exonuclease/phosphatase.	Hypothetical protein.	0.452
TW91_1996	TW91_1997	TW91_1996	TW91_1997	Hypothetical protein.	Hypothetical protein.	0.773
TW91_1996	TW91_1998	TW91_1996	TW91_1998	Hypothetical protein.	Hypothetical protein.	0.516
TW91_1997	TW91_1996	TW91_1997	TW91_1996	Hypothetical protein.	Hypothetical protein.	0.773
TW91_1997	TW91_1998	TW91_1997	TW91_1998	Hypothetical protein.	Hypothetical protein.	0.542
TW91_1998	TW91_0504	TW91_1998	TW91_0504	Hypothetical protein.	Putative membrane protein.	0.410
TW91_1998	TW91_0812	TW91_1998	TW91_0812	Hypothetical protein.	Hypothetical protein.	0.532
TW91_1998	TW91_0884	TW91_1998	TW91_0884	Hypothetical protein.	Protein YhbP.	0.486
TW91_1998	TW91_1626	TW91_1998	TW91_1626	Hypothetical protein.	Endonuclease/exonuclease/phosphatase.	0.452
TW91_1998	TW91_1996	TW91_1998	TW91_1996	Hypothetical protein.	Hypothetical protein.	0.516
TW91_1998	TW91_1997	TW91_1998	TW91_1997	Hypothetical protein.	Hypothetical protein.	0.542
TW91_1998	sucC	TW91_1998	TW91_2000	Hypothetical protein.	succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.446
TW91_1998	sucD	TW91_1998	TW91_1999	Hypothetical protein.	succinate-CoA ligase, alpha subunit family; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	0.452
sucC	TW91_1998	TW91_2000	TW91_1998	succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	Hypothetical protein.	0.446
sucC	sucD	TW91_2000	TW91_1999	succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	succinate-CoA ligase, alpha subunit family; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	0.999
sucD	TW91_1998	TW91_1999	TW91_1998	succinate-CoA ligase, alpha subunit family; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	Hypothetical protein.	0.452
sucD	sucC	TW91_1999	TW91_2000	succinate-CoA ligase, alpha subunit family; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.999