Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
THA_100 | THA_101 | THA_100 | THA_101 | Cytoplasmic axial filament protein. | Udk phosphoribulokinase family protein. | 0.806 |
THA_100 | THA_102 | THA_100 | THA_102 | Cytoplasmic axial filament protein. | Hypothetical protein. | 0.768 |
THA_100 | THA_103 | THA_100 | THA_103 | Cytoplasmic axial filament protein. | Conserved hypothetical protein. | 0.768 |
THA_100 | THA_1518 | THA_100 | THA_1518 | Cytoplasmic axial filament protein. | Hypothetical protein; Displays ATPase and GTPase activities. | 0.736 |
THA_100 | THA_971 | THA_100 | THA_971 | Cytoplasmic axial filament protein. | ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | 0.773 |
THA_100 | ahcY | THA_100 | THA_99 | Cytoplasmic axial filament protein. | Adenosylhomocysteinase. | 0.809 |
THA_100 | eno | THA_100 | THA_405 | Cytoplasmic axial filament protein. | Eno phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.744 |
THA_100 | hfq | THA_100 | THA_104 | Cytoplasmic axial filament protein. | Hfq RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.871 |
THA_100 | lepB | THA_100 | THA_58 | Cytoplasmic axial filament protein. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.805 |
THA_100 | pnp | THA_100 | THA_1819 | Cytoplasmic axial filament protein. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.868 |
THA_101 | THA_100 | THA_101 | THA_100 | Udk phosphoribulokinase family protein. | Cytoplasmic axial filament protein. | 0.806 |
THA_101 | THA_102 | THA_101 | THA_102 | Udk phosphoribulokinase family protein. | Hypothetical protein. | 0.807 |
THA_101 | THA_103 | THA_101 | THA_103 | Udk phosphoribulokinase family protein. | Conserved hypothetical protein. | 0.807 |
THA_101 | ahcY | THA_101 | THA_99 | Udk phosphoribulokinase family protein. | Adenosylhomocysteinase. | 0.763 |
THA_101 | hfq | THA_101 | THA_104 | Udk phosphoribulokinase family protein. | Hfq RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.805 |
THA_102 | THA_100 | THA_102 | THA_100 | Hypothetical protein. | Cytoplasmic axial filament protein. | 0.768 |
THA_102 | THA_101 | THA_102 | THA_101 | Hypothetical protein. | Udk phosphoribulokinase family protein. | 0.807 |
THA_102 | THA_103 | THA_102 | THA_103 | Hypothetical protein. | Conserved hypothetical protein. | 0.807 |
THA_102 | ahcY | THA_102 | THA_99 | Hypothetical protein. | Adenosylhomocysteinase. | 0.753 |
THA_102 | hfq | THA_102 | THA_104 | Hypothetical protein. | Hfq RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.805 |
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