Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THA_2000Modification methylase, type III R/M system. (879 aa)    
Predicted Functional Partners:
THA_1999
Type III restriction enzyme R protein.
 
   
 0.959
THA_1153
FG-GAP repeat domain protein.
  
     0.677
THA_1998
Hypothetical protein.
     
 0.562
THA_186
Hypothetical protein.
  
     0.537
THA_1930
Bacterial extracellular solute-binding protein, putative.
  
     0.534
THA_528
Hypothetical protein.
  
     0.514
THA_1032
Hypothetical protein.
  
     0.503
THA_665
OB-fold nucleic acid binding domain protein.
  
     0.458
THA_873
Polysaccharide export protein, putative.
  
     0.437
THA_2
DNA double-strand break repair protein Rad50, putative.
 
     0.425
Your Current Organism:
Thermosipho africanus
NCBI taxonomy Id: 484019
Other names: T. africanus TCF52B, Thermosipho africanus TCF52B, Thermosipho africanus str. TCF52B, Thermosipho africanus strain TCF52B
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