Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THA_613Regulator of cell autolysis. (554 aa)    
Predicted Functional Partners:
THA_612
Autolysin response regulator.
 
 0.998
THA_614
Hypothetical protein.
       0.773
THA_611
Carbon starvation-induced protein.
 
   
 0.678
THA_616
Sn-glycerol-3-phosphate transport system permease protein UgpA.
  
    0.455
THA_615
Glycerol-3-phosphate ABC transporter permease protein.
       0.440
THA_1109
Cyclic diguanylate phosphodiesterase (EAL) domain protein.
      
 0.401
Your Current Organism:
Thermosipho africanus
NCBI taxonomy Id: 484019
Other names: T. africanus TCF52B, Thermosipho africanus TCF52B, Thermosipho africanus str. TCF52B, Thermosipho africanus strain TCF52B
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