AJR22420.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR22420.1

Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (371 aa)

Predicted Functional Partners:

AJR22421.1

0.948

AJR22422.1

0.786

AJR25013.1

0.783

AJR25014.1

0.745

AJR23828.1

0.682

AJR25010.1

0.679

ssuB

0.676

AJR25009.1

0.676

AJR25011.1

0.673

AJR23501.1

0.657

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22420.1	AJR22421.1	TZ53_00080	TZ53_00085	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJR22420.1	AJR22422.1	TZ53_00080	TZ53_00090	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
AJR22420.1	AJR23501.1	TZ53_00080	TZ53_06925	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
AJR22420.1	AJR23828.1	TZ53_00080	TZ53_08930	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.682
AJR22420.1	AJR25009.1	TZ53_00080	TZ53_16020	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
AJR22420.1	AJR25010.1	TZ53_00080	TZ53_16025	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
AJR22420.1	AJR25011.1	TZ53_00080	TZ53_16030	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
AJR22420.1	AJR25013.1	TZ53_00080	TZ53_16040	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
AJR22420.1	AJR25014.1	TZ53_00080	TZ53_16045	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
AJR22420.1	ssuB	TZ53_00080	TZ53_08935	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.	0.676
AJR22421.1	AJR22420.1	TZ53_00085	TZ53_00080	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJR22421.1	AJR22422.1	TZ53_00085	TZ53_00090	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJR22421.1	AJR25013.1	TZ53_00085	TZ53_16040	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
AJR22421.1	AJR25014.1	TZ53_00085	TZ53_16045	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
AJR22422.1	AJR22420.1	TZ53_00090	TZ53_00080	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
AJR22422.1	AJR22421.1	TZ53_00090	TZ53_00085	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJR22422.1	AJR23828.1	TZ53_00090	TZ53_08930	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AJR22422.1	AJR25013.1	TZ53_00090	TZ53_16040	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
AJR22422.1	AJR25014.1	TZ53_00090	TZ53_16045	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AJR22422.1	ssuB	TZ53_00090	TZ53_08935	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.	0.401