Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AJR26056.1Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)    
Predicted Functional Partners:
AJR22431.1
Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.738
AJR24777.1
Photosystem reaction center subunit H; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.695
AJR22430.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.691
AJR24849.1
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
   
  
 0.674
AJR26233.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.662
AJR22429.1
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.594
AJR22428.1
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.534
AJR23491.1
Sterol desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.523
AJR22427.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.514
AJR26477.1
DNA transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.513
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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