AJR22450.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR22450.1

Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)

Predicted Functional Partners:

AJR22451.1

0.938

AJR22449.1

0.861

AJR22447.1

0.623

AJR22448.1

0.585

AJR22452.1

0.551

AJR24627.1

0.509

AJR24062.1

0.499

AJR22446.1

0.457

AJR22822.1

0.443

AJR22934.1

0.437

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22446.1	AJR22447.1	TZ53_00215	TZ53_00220	Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme biosynthesis protein HemY; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.	0.719
AJR22446.1	AJR22448.1	TZ53_00215	TZ53_00225	Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
AJR22446.1	AJR22449.1	TZ53_00215	TZ53_00230	Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhamnosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AJR22446.1	AJR22450.1	TZ53_00215	TZ53_00235	Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
AJR22446.1	AJR22451.1	TZ53_00215	TZ53_00240	Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]	0.438
AJR22447.1	AJR22446.1	TZ53_00220	TZ53_00215	Heme biosynthesis protein HemY; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.	Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.719
AJR22447.1	AJR22448.1	TZ53_00220	TZ53_00225	Heme biosynthesis protein HemY; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649
AJR22447.1	AJR22449.1	TZ53_00220	TZ53_00230	Heme biosynthesis protein HemY; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.	Rhamnosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
AJR22447.1	AJR22450.1	TZ53_00220	TZ53_00235	Heme biosynthesis protein HemY; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.	Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AJR22447.1	AJR22451.1	TZ53_00220	TZ53_00240	Heme biosynthesis protein HemY; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.	Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]	0.504
AJR22448.1	AJR22446.1	TZ53_00225	TZ53_00215	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
AJR22448.1	AJR22447.1	TZ53_00225	TZ53_00220	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme biosynthesis protein HemY; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.	0.649
AJR22448.1	AJR22449.1	TZ53_00225	TZ53_00230	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhamnosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
AJR22448.1	AJR22450.1	TZ53_00225	TZ53_00235	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.585
AJR22448.1	AJR22451.1	TZ53_00225	TZ53_00240	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]	0.559
AJR22449.1	AJR22446.1	TZ53_00230	TZ53_00215	Rhamnosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AJR22449.1	AJR22447.1	TZ53_00230	TZ53_00220	Rhamnosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme biosynthesis protein HemY; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.	0.572
AJR22449.1	AJR22448.1	TZ53_00230	TZ53_00225	Rhamnosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
AJR22449.1	AJR22450.1	TZ53_00230	TZ53_00235	Rhamnosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AJR22449.1	AJR22451.1	TZ53_00230	TZ53_00240	Rhamnosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]	0.861