AJR22471.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

AJR22471.1

Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)

Predicted Functional Partners:

AJR23373.1

0.766

AJR22473.1

0.764

AJR22470.1

0.760

AJR24490.1

0.758

AJR22469.1

0.678

AJR22468.1

0.653

AJR22467.1

0.635

AJR22466.1

0.513

AJR24009.1

0.442

AJR23526.1

0.441

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22466.1	AJR22467.1	TZ53_00320	TZ53_00325	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AJR22466.1	AJR22468.1	TZ53_00320	TZ53_00330	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873
AJR22466.1	AJR22469.1	TZ53_00320	TZ53_00335	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
AJR22466.1	AJR22470.1	TZ53_00320	TZ53_00340	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lactoylglutathione lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
AJR22466.1	AJR22471.1	TZ53_00320	TZ53_00345	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
AJR22467.1	AJR22466.1	TZ53_00325	TZ53_00320	3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AJR22467.1	AJR22468.1	TZ53_00325	TZ53_00330	3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
AJR22467.1	AJR22469.1	TZ53_00325	TZ53_00335	3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
AJR22467.1	AJR22470.1	TZ53_00325	TZ53_00340	3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lactoylglutathione lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.891
AJR22467.1	AJR22471.1	TZ53_00325	TZ53_00345	3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
AJR22468.1	AJR22466.1	TZ53_00330	TZ53_00320	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873
AJR22468.1	AJR22467.1	TZ53_00330	TZ53_00325	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
AJR22468.1	AJR22469.1	TZ53_00330	TZ53_00335	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
AJR22468.1	AJR22470.1	TZ53_00330	TZ53_00340	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lactoylglutathione lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
AJR22468.1	AJR22471.1	TZ53_00330	TZ53_00345	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
AJR22469.1	AJR22466.1	TZ53_00335	TZ53_00320	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
AJR22469.1	AJR22467.1	TZ53_00335	TZ53_00325	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
AJR22469.1	AJR22468.1	TZ53_00335	TZ53_00330	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
AJR22469.1	AJR22470.1	TZ53_00335	TZ53_00340	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lactoylglutathione lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.871
AJR22469.1	AJR22471.1	TZ53_00335	TZ53_00345	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678