AJR22581.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR22581.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)

Predicted Functional Partners:

AJR26074.1

0.819

AJR26091.1

0.774

AJR26313.1

0.774

AJR24842.1

0.774

AJR25144.1

0.774

AJR26396.1

0.773

AJR24091.1

0.771

AJR22545.1

0.768

AJR24290.1

0.768

AJR24321.1

0.767

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22545.1	AJR22581.1	TZ53_00830	TZ53_01040	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AJR22545.1	AJR24091.1	TZ53_00830	TZ53_10490	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
AJR22545.1	AJR24290.1	TZ53_00830	TZ53_11700	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
AJR22545.1	AJR24321.1	TZ53_00830	TZ53_11875	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
AJR22545.1	AJR24842.1	TZ53_00830	TZ53_15020	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
AJR22545.1	AJR25144.1	TZ53_00830	TZ53_16830	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
AJR22545.1	AJR26074.1	TZ53_00830	TZ53_01030	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
AJR22545.1	AJR26091.1	TZ53_00830	TZ53_01555	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761
AJR22545.1	AJR26313.1	TZ53_00830	TZ53_10245	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
AJR22545.1	AJR26396.1	TZ53_00830	TZ53_14370	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
AJR22581.1	AJR22545.1	TZ53_01040	TZ53_00830	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AJR22581.1	AJR24091.1	TZ53_01040	TZ53_10490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AJR22581.1	AJR24290.1	TZ53_01040	TZ53_11700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AJR22581.1	AJR24321.1	TZ53_01040	TZ53_11875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
AJR22581.1	AJR24842.1	TZ53_01040	TZ53_15020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AJR22581.1	AJR25144.1	TZ53_01040	TZ53_16830	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AJR22581.1	AJR26074.1	TZ53_01040	TZ53_01030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
AJR22581.1	AJR26091.1	TZ53_01040	TZ53_01555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AJR22581.1	AJR26313.1	TZ53_01040	TZ53_10245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AJR22581.1	AJR26396.1	TZ53_01040	TZ53_14370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773