STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR26075.1Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)    
Predicted Functional Partners:
AJR22585.1
Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.715
AJR23149.1
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.643
AJR22597.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.572
AJR23430.1
Autotransporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.523
AJR26044.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.516
AJR23448.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.496
AJR25236.1
Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.496
AJR23837.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.492
AJR25323.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.481
AJR24018.1
Glycerol acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.448
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.