AJR22606.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

AJR22606.1

ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)

Predicted Functional Partners:

AJR25965.1

0.862

AJR22617.1

0.836

rsmI

0.808

AJR22604.1

0.725

AJR23496.1

0.697

lptD

0.678

AJR25462.1

0.629

AJR26091.1

0.617

AJR22986.1

0.574

AJR22461.1

0.550

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22461.1	AJR22606.1	TZ53_00295	TZ53_01200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
AJR22461.1	AJR22986.1	TZ53_00295	TZ53_03590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AJR22461.1	AJR25462.1	TZ53_00295	TZ53_18725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
AJR22461.1	AJR26091.1	TZ53_00295	TZ53_01555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
AJR22461.1	lptD	TZ53_00295	TZ53_14390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.573
AJR22604.1	AJR22606.1	TZ53_01190	TZ53_01200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
AJR22604.1	rsmI	TZ53_01190	TZ53_01195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family.	16S rRNA methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.	0.844
AJR22606.1	AJR22461.1	TZ53_01200	TZ53_00295	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
AJR22606.1	AJR22604.1	TZ53_01200	TZ53_01190	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family.	0.725
AJR22606.1	AJR22617.1	TZ53_01200	TZ53_01265	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
AJR22606.1	AJR22986.1	TZ53_01200	TZ53_03590	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
AJR22606.1	AJR23496.1	TZ53_01200	TZ53_06900	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
AJR22606.1	AJR25462.1	TZ53_01200	TZ53_18725	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
AJR22606.1	AJR25965.1	TZ53_01200	TZ53_21665	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
AJR22606.1	AJR26091.1	TZ53_01200	TZ53_01555	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
AJR22606.1	lptD	TZ53_01200	TZ53_14390	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.678
AJR22606.1	rsmI	TZ53_01200	TZ53_01195	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	16S rRNA methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.	0.808
AJR22617.1	AJR22606.1	TZ53_01265	TZ53_01200	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
AJR22986.1	AJR22461.1	TZ53_03590	TZ53_00295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AJR22986.1	AJR22606.1	TZ53_03590	TZ53_01200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574