AJR22606.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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textmining

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co-expression

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[Homology]

Score

AJR22606.1

ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)

Predicted Functional Partners:

AJR25965.1

0.815

rsmI

0.797

AJR22617.1

0.781

AJR22604.1

0.723

lptD

0.676

AJR24699.1

0.654

AJR23496.1

0.652

AJR25462.1

0.629

gshB

0.627

AJR26091.1

0.617

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22604.1	AJR22606.1	TZ53_01190	TZ53_01200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
AJR22604.1	gshB	TZ53_01190	TZ53_01185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family.	Glutathione synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic GSH synthase family.	0.685
AJR22604.1	rsmI	TZ53_01190	TZ53_01195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family.	16S rRNA methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.	0.843
AJR22606.1	AJR22604.1	TZ53_01200	TZ53_01190	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family.	0.723
AJR22606.1	AJR22617.1	TZ53_01200	TZ53_01265	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.781
AJR22606.1	AJR23496.1	TZ53_01200	TZ53_06900	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652
AJR22606.1	AJR24699.1	TZ53_01200	TZ53_14155	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
AJR22606.1	AJR25462.1	TZ53_01200	TZ53_18725	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
AJR22606.1	AJR25965.1	TZ53_01200	TZ53_21665	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
AJR22606.1	AJR26091.1	TZ53_01200	TZ53_01555	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
AJR22606.1	gshB	TZ53_01200	TZ53_01185	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic GSH synthase family.	0.627
AJR22606.1	lptD	TZ53_01200	TZ53_14390	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.676
AJR22606.1	rsmI	TZ53_01200	TZ53_01195	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	16S rRNA methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.	0.797
AJR22617.1	AJR22606.1	TZ53_01265	TZ53_01200	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.781
AJR23496.1	AJR22606.1	TZ53_06900	TZ53_01200	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652
AJR24699.1	AJR22606.1	TZ53_14155	TZ53_01200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
AJR25462.1	AJR22606.1	TZ53_18725	TZ53_01200	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
AJR25462.1	lptD	TZ53_18725	TZ53_14390	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.682
AJR25965.1	AJR22606.1	TZ53_21665	TZ53_01200	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
AJR26091.1	AJR22606.1	TZ53_01555	TZ53_01200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617