AJR22607.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

AJR22607.1

ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)

Predicted Functional Partners:

AJR22608.1

0.999

AJR22609.1

0.998

AJR22610.1

0.659

lolD

0.600

AJR23469.1

0.581

AJR23621.1

0.564

cbiA

0.532

AJR22927.1

0.529

AJR23489.1

0.467

AJR23673.1

0.460

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22607.1	AJR22608.1	TZ53_01205	TZ53_01210	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.999
AJR22607.1	AJR22609.1	TZ53_01205	TZ53_01215	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJR22607.1	AJR22610.1	TZ53_01205	TZ53_01220	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
AJR22607.1	AJR22927.1	TZ53_01205	TZ53_03270	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AAA ATPase family.	0.529
AJR22607.1	AJR23469.1	TZ53_01205	TZ53_06740	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
AJR22607.1	AJR23489.1	TZ53_01205	TZ53_06840	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
AJR22607.1	AJR23621.1	TZ53_01205	TZ53_07725	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
AJR22607.1	AJR23673.1	TZ53_01205	TZ53_08050	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
AJR22607.1	cbiA	TZ53_01205	TZ53_06755	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	0.532
AJR22607.1	lolD	TZ53_01205	TZ53_19220	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.	0.600
AJR22608.1	AJR22607.1	TZ53_01210	TZ53_01205	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22608.1	AJR22609.1	TZ53_01210	TZ53_01215	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJR22608.1	AJR22610.1	TZ53_01210	TZ53_01220	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
AJR22608.1	AJR23469.1	TZ53_01210	TZ53_06740	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
AJR22608.1	AJR23621.1	TZ53_01210	TZ53_07725	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AJR22608.1	lolD	TZ53_01210	TZ53_19220	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	ABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.	0.436
AJR22609.1	AJR22607.1	TZ53_01215	TZ53_01205	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJR22609.1	AJR22608.1	TZ53_01215	TZ53_01210	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.997
AJR22609.1	AJR22610.1	TZ53_01215	TZ53_01220	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
AJR22609.1	AJR23469.1	TZ53_01215	TZ53_06740	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686