AJR22609.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR22609.1

Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)

Predicted Functional Partners:

AJR22607.1

0.997

AJR22608.1

0.987

AJR22610.1

0.830

AJR22598.1

0.777

AJR22639.1

0.772

AJR26172.1

0.766

AJR22712.1

0.765

AJR24132.1

0.752

AJR25070.1

0.705

AJR25666.1

0.705

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22598.1	AJR22607.1	TZ53_01140	TZ53_01205	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
AJR22598.1	AJR22609.1	TZ53_01140	TZ53_01215	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
AJR22598.1	AJR22639.1	TZ53_01140	TZ53_01395	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
AJR22598.1	AJR22712.1	TZ53_01140	TZ53_01840	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AJR22598.1	AJR24132.1	TZ53_01140	TZ53_10725	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
AJR22598.1	AJR25070.1	TZ53_01140	TZ53_16395	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
AJR22598.1	AJR25666.1	TZ53_01140	TZ53_19905	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
AJR22598.1	AJR26172.1	TZ53_01140	TZ53_04770	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
AJR22607.1	AJR22598.1	TZ53_01205	TZ53_01140	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
AJR22607.1	AJR22608.1	TZ53_01205	TZ53_01210	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.998
AJR22607.1	AJR22609.1	TZ53_01205	TZ53_01215	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJR22607.1	AJR22610.1	TZ53_01205	TZ53_01220	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
AJR22607.1	AJR22639.1	TZ53_01205	TZ53_01395	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
AJR22607.1	AJR22712.1	TZ53_01205	TZ53_01840	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.726
AJR22607.1	AJR24132.1	TZ53_01205	TZ53_10725	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
AJR22607.1	AJR25070.1	TZ53_01205	TZ53_16395	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
AJR22607.1	AJR25666.1	TZ53_01205	TZ53_19905	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
AJR22607.1	AJR26172.1	TZ53_01205	TZ53_04770	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
AJR22608.1	AJR22607.1	TZ53_01210	TZ53_01205	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJR22608.1	AJR22609.1	TZ53_01210	TZ53_01215	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987