AJR22650.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR22650.1

Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)

Predicted Functional Partners:

AJR23510.1

0.981

AJR22782.1

0.973

AJR22780.1

0.941

AJR26236.1

0.857

AJR22781.1

0.815

tuf

0.799

ctaG

0.786

AJR22651.1

0.773

AJR26039.1

0.719

AJR24320.1

0.703

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22650.1	AJR22651.1	TZ53_01460	TZ53_01465	Derived by automated computational analysis using gene prediction method: Protein Homology.	GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJR22650.1	AJR22780.1	TZ53_01460	TZ53_02345	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
AJR22650.1	AJR22781.1	TZ53_01460	TZ53_02350	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.815
AJR22650.1	AJR22782.1	TZ53_01460	TZ53_02355	Derived by automated computational analysis using gene prediction method: Protein Homology.	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.973
AJR22650.1	AJR23510.1	TZ53_01460	TZ53_06985	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AJR22650.1	AJR24320.1	TZ53_01460	TZ53_11865	Derived by automated computational analysis using gene prediction method: Protein Homology.	NagC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
AJR22650.1	AJR26039.1	TZ53_01460	TZ53_22125	Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.719
AJR22650.1	AJR26236.1	TZ53_01460	TZ53_06995	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
AJR22650.1	ctaG	TZ53_01460	TZ53_11990	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase assembly protein; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.	0.786
AJR22650.1	tuf	TZ53_01460	TZ53_11290	Derived by automated computational analysis using gene prediction method: Protein Homology.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.799
AJR22651.1	AJR22650.1	TZ53_01465	TZ53_01460	GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJR22780.1	AJR22650.1	TZ53_02345	TZ53_01460	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
AJR22780.1	AJR22781.1	TZ53_02345	TZ53_02350	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
AJR22780.1	AJR22782.1	TZ53_02345	TZ53_02355	Derived by automated computational analysis using gene prediction method: Protein Homology.	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
AJR22780.1	AJR23510.1	TZ53_02345	TZ53_06985	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
AJR22780.1	AJR26039.1	TZ53_02345	TZ53_22125	Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
AJR22780.1	ctaG	TZ53_02345	TZ53_11990	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase assembly protein; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.	0.612
AJR22780.1	tuf	TZ53_02345	TZ53_11290	Derived by automated computational analysis using gene prediction method: Protein Homology.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.795
AJR22781.1	AJR22650.1	TZ53_02350	TZ53_01460	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
AJR22781.1	AJR22780.1	TZ53_02350	TZ53_02345	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999