AJR22689.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR22689.1

Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (435 aa)

Predicted Functional Partners:

AJR25276.1

0.918

AJR26093.1

0.794

AJR22524.1

0.517

AJR22594.1

0.517

AJR23363.1

0.517

AJR23892.1

0.517

AJR24294.1

0.517

AJR24321.1

0.517

AJR24452.1

0.517

AJR25116.1

0.517

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22524.1	AJR22689.1	TZ53_00705	TZ53_01685	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR22594.1	AJR22689.1	TZ53_01115	TZ53_01685	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR22689.1	AJR22524.1	TZ53_01685	TZ53_00705	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR22689.1	AJR22594.1	TZ53_01685	TZ53_01115	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR22689.1	AJR23363.1	TZ53_01685	TZ53_06025	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR22689.1	AJR23892.1	TZ53_01685	TZ53_09315	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR22689.1	AJR24294.1	TZ53_01685	TZ53_11720	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR22689.1	AJR24321.1	TZ53_01685	TZ53_11875	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR22689.1	AJR24452.1	TZ53_01685	TZ53_12680	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR22689.1	AJR25116.1	TZ53_01685	TZ53_16675	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR22689.1	AJR25276.1	TZ53_01685	TZ53_17640	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
AJR22689.1	AJR26093.1	TZ53_01685	TZ53_01680	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
AJR23363.1	AJR22689.1	TZ53_06025	TZ53_01685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR23892.1	AJR22689.1	TZ53_09315	TZ53_01685	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR24294.1	AJR22689.1	TZ53_11720	TZ53_01685	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR24321.1	AJR22689.1	TZ53_11875	TZ53_01685	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR24452.1	AJR22689.1	TZ53_12680	TZ53_01685	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR25116.1	AJR22689.1	TZ53_16675	TZ53_01685	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR25276.1	AJR22689.1	TZ53_17640	TZ53_01685	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
AJR26093.1	AJR22689.1	TZ53_01680	TZ53_01685	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794