AJR22728.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR22728.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)

Predicted Functional Partners:

AJR26246.1

0.783

AJR22727.1

0.570

AJR24134.1

0.544

AJR26101.1

0.527

putA

0.527

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22727.1	AJR22728.1	TZ53_01950	TZ53_01955	Dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
AJR22727.1	AJR26101.1	TZ53_01950	TZ53_01960	Dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
AJR22728.1	AJR22727.1	TZ53_01955	TZ53_01950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
AJR22728.1	AJR24134.1	TZ53_01955	TZ53_10740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
AJR22728.1	AJR26101.1	TZ53_01955	TZ53_01960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
AJR22728.1	AJR26246.1	TZ53_01955	TZ53_07310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
AJR22728.1	putA	TZ53_01955	TZ53_07765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.527
AJR24134.1	AJR22728.1	TZ53_10740	TZ53_01955	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
AJR24134.1	AJR26101.1	TZ53_10740	TZ53_01960	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
AJR24134.1	AJR26246.1	TZ53_10740	TZ53_07310	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674
AJR24134.1	putA	TZ53_10740	TZ53_07765	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.952
AJR26101.1	AJR22727.1	TZ53_01960	TZ53_01950	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
AJR26101.1	AJR22728.1	TZ53_01960	TZ53_01955	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
AJR26101.1	AJR24134.1	TZ53_01960	TZ53_10740	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
AJR26101.1	putA	TZ53_01960	TZ53_07765	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.527
AJR26246.1	AJR22728.1	TZ53_07310	TZ53_01955	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
AJR26246.1	AJR24134.1	TZ53_07310	TZ53_10740	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674
AJR26246.1	putA	TZ53_07310	TZ53_07765	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.585
putA	AJR22728.1	TZ53_07765	TZ53_01955	Transcriptional regulator; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
putA	AJR24134.1	TZ53_07765	TZ53_10740	Transcriptional regulator; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952