AJR22746.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

AJR22746.1

DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)

Predicted Functional Partners:

AJR26477.1

0.628

AJR24791.1

0.565

AJR22867.1

0.530

AJR23673.1

0.528

AJR22744.1

0.521

AJR22757.1

0.509

AJR25283.1

0.506

AJR22745.1

0.486

AJR22743.1

0.480

AJR23146.1

0.475

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22743.1	AJR22744.1	TZ53_02070	TZ53_02075	Conjugal transfer protein TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
AJR22743.1	AJR22745.1	TZ53_02070	TZ53_02080	Conjugal transfer protein TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraG; Type IV secretion VirD4 coupling protein family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AJR22743.1	AJR22746.1	TZ53_02070	TZ53_02085	Conjugal transfer protein TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
AJR22744.1	AJR22743.1	TZ53_02075	TZ53_02070	CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
AJR22744.1	AJR22745.1	TZ53_02075	TZ53_02080	CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraG; Type IV secretion VirD4 coupling protein family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
AJR22744.1	AJR22746.1	TZ53_02075	TZ53_02085	CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
AJR22745.1	AJR22743.1	TZ53_02080	TZ53_02070	Conjugal transfer protein TraG; Type IV secretion VirD4 coupling protein family; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AJR22745.1	AJR22744.1	TZ53_02080	TZ53_02075	Conjugal transfer protein TraG; Type IV secretion VirD4 coupling protein family; Derived by automated computational analysis using gene prediction method: Protein Homology.	CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
AJR22745.1	AJR22746.1	TZ53_02080	TZ53_02085	Conjugal transfer protein TraG; Type IV secretion VirD4 coupling protein family; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
AJR22746.1	AJR22743.1	TZ53_02085	TZ53_02070	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
AJR22746.1	AJR22744.1	TZ53_02085	TZ53_02075	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
AJR22746.1	AJR22745.1	TZ53_02085	TZ53_02080	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraG; Type IV secretion VirD4 coupling protein family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
AJR22746.1	AJR22757.1	TZ53_02085	TZ53_02185	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
AJR22746.1	AJR22867.1	TZ53_02085	TZ53_02875	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
AJR22746.1	AJR23146.1	TZ53_02085	TZ53_04555	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AJR22746.1	AJR23673.1	TZ53_02085	TZ53_08050	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
AJR22746.1	AJR24791.1	TZ53_02085	TZ53_14720	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
AJR22746.1	AJR25283.1	TZ53_02085	TZ53_17675	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
AJR22746.1	AJR26477.1	TZ53_02085	TZ53_17515	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
AJR22757.1	AJR22746.1	TZ53_02185	TZ53_02085	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509