AJR22749.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR22749.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)

Predicted Functional Partners:

AJR22750.1

0.938

AJR26104.1

0.850

AJR22751.1

0.790

AJR22736.1

0.743

AJR22737.1

0.725

AJR22741.1

0.703

AJR25324.1

0.691

AJR25326.1

0.690

AJR23349.1

0.688

AJR22747.1

0.669

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22736.1	AJR22737.1	TZ53_02030	TZ53_02035	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22736.1	AJR22741.1	TZ53_02030	TZ53_02055	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22736.1	AJR22747.1	TZ53_02030	TZ53_02095	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
AJR22736.1	AJR22749.1	TZ53_02030	TZ53_02110	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
AJR22736.1	AJR22750.1	TZ53_02030	TZ53_02115	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
AJR22736.1	AJR22751.1	TZ53_02030	TZ53_02125	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
AJR22736.1	AJR23349.1	TZ53_02030	TZ53_05915	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
AJR22736.1	AJR25324.1	TZ53_02030	TZ53_17945	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
AJR22736.1	AJR25326.1	TZ53_02030	TZ53_17955	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
AJR22737.1	AJR22736.1	TZ53_02035	TZ53_02030	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22737.1	AJR22741.1	TZ53_02035	TZ53_02055	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJR22737.1	AJR22747.1	TZ53_02035	TZ53_02095	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
AJR22737.1	AJR22749.1	TZ53_02035	TZ53_02110	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
AJR22737.1	AJR22750.1	TZ53_02035	TZ53_02115	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
AJR22737.1	AJR22751.1	TZ53_02035	TZ53_02125	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
AJR22737.1	AJR23349.1	TZ53_02035	TZ53_05915	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
AJR22737.1	AJR25324.1	TZ53_02035	TZ53_17945	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
AJR22737.1	AJR25326.1	TZ53_02035	TZ53_17955	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
AJR22741.1	AJR22736.1	TZ53_02055	TZ53_02030	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22741.1	AJR22737.1	TZ53_02055	TZ53_02035	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997