AJR22751.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR22751.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)

Predicted Functional Partners:

AJR22750.1

0.881

AJR22749.1

0.790

AJR22740.1

0.781

AJR22747.1

0.781

AJR23108.1

0.780

AJR22739.1

0.779

AJR22736.1

0.778

AJR22742.1

0.778

AJR22744.1

0.777

AJR22737.1

0.776

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22736.1	AJR22737.1	TZ53_02030	TZ53_02035	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22736.1	AJR22739.1	TZ53_02030	TZ53_02045	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbL; Type IV secretion VirB6 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJR22736.1	AJR22740.1	TZ53_02030	TZ53_02050	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJR22736.1	AJR22742.1	TZ53_02030	TZ53_02060	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AJR22736.1	AJR22744.1	TZ53_02030	TZ53_02075	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
AJR22736.1	AJR22747.1	TZ53_02030	TZ53_02095	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
AJR22736.1	AJR22749.1	TZ53_02030	TZ53_02110	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
AJR22736.1	AJR22750.1	TZ53_02030	TZ53_02115	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
AJR22736.1	AJR22751.1	TZ53_02030	TZ53_02125	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
AJR22736.1	AJR23108.1	TZ53_02030	TZ53_04325	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type IV secretory pathway VirD2 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
AJR22737.1	AJR22736.1	TZ53_02035	TZ53_02030	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22737.1	AJR22739.1	TZ53_02035	TZ53_02045	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbL; Type IV secretion VirB6 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJR22737.1	AJR22740.1	TZ53_02035	TZ53_02050	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
AJR22737.1	AJR22742.1	TZ53_02035	TZ53_02060	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AJR22737.1	AJR22744.1	TZ53_02035	TZ53_02075	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
AJR22737.1	AJR22747.1	TZ53_02035	TZ53_02095	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
AJR22737.1	AJR22749.1	TZ53_02035	TZ53_02110	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
AJR22737.1	AJR22750.1	TZ53_02035	TZ53_02115	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
AJR22737.1	AJR22751.1	TZ53_02035	TZ53_02125	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
AJR22737.1	AJR23108.1	TZ53_02035	TZ53_04325	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type IV secretory pathway VirD2 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788