AJR26105.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Cooccurrence

Coexpression

Experiments

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[Homology]

Score

AJR26105.1

phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)

Predicted Functional Partners:

AJR25366.1

0.673

AJR22754.1

0.671

AJR25364.1

0.670

AJR23262.1

0.646

AJR25368.1

0.632

AJR23309.1

0.622

AJR24423.1

0.579

AJR24441.1

0.560

AJR25346.1

0.520

AJR23546.1

0.516

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22754.1	AJR26105.1	TZ53_02165	TZ53_02160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671
AJR23262.1	AJR26105.1	TZ53_05305	TZ53_02160	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
AJR23309.1	AJR26105.1	TZ53_05615	TZ53_02160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622
AJR23546.1	AJR24423.1	TZ53_07230	TZ53_12480	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.642
AJR23546.1	AJR24441.1	TZ53_07230	TZ53_12600	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
AJR23546.1	AJR26105.1	TZ53_07230	TZ53_02160	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
AJR24423.1	AJR23546.1	TZ53_12480	TZ53_07230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
AJR24423.1	AJR24441.1	TZ53_12480	TZ53_12600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
AJR24423.1	AJR26105.1	TZ53_12480	TZ53_02160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
AJR24441.1	AJR23546.1	TZ53_12600	TZ53_07230	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
AJR24441.1	AJR24423.1	TZ53_12600	TZ53_12480	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.666
AJR24441.1	AJR26105.1	TZ53_12600	TZ53_02160	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
AJR25346.1	AJR26105.1	TZ53_18080	TZ53_02160	long-chain-fatty-acyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
AJR25364.1	AJR26105.1	TZ53_18170	TZ53_02160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
AJR25366.1	AJR25368.1	TZ53_18180	TZ53_18190	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
AJR25366.1	AJR26105.1	TZ53_18180	TZ53_02160	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
AJR25368.1	AJR25366.1	TZ53_18190	TZ53_18180	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
AJR25368.1	AJR26105.1	TZ53_18190	TZ53_02160	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
AJR26105.1	AJR22754.1	TZ53_02160	TZ53_02165	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671
AJR26105.1	AJR23262.1	TZ53_02160	TZ53_05305	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646