AJR22844.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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textmining

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co-expression

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[Homology]

Score

AJR22844.1

Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)

Predicted Functional Partners:

AJR24701.1

0.803

AJR23749.1

0.670

AJR26275.1

0.670

AJR22654.1

0.623

AJR23089.1

0.623

AJR26453.1

0.623

AJR25854.1

0.623

pal

0.622

lptD

0.565

AJR26269.1

0.558

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22654.1	AJR22844.1	TZ53_01480	TZ53_02720	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AJR22654.1	AJR23749.1	TZ53_01480	TZ53_08470	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.708
AJR22654.1	AJR25854.1	TZ53_01480	TZ53_21010	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJR22654.1	AJR26275.1	TZ53_01480	TZ53_08795	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.723
AJR22654.1	AJR26453.1	TZ53_01480	TZ53_16345	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJR22654.1	lptD	TZ53_01480	TZ53_14390	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.564
AJR22844.1	AJR22654.1	TZ53_02720	TZ53_01480	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AJR22844.1	AJR23089.1	TZ53_02720	TZ53_04215	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	OmpA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AJR22844.1	AJR23749.1	TZ53_02720	TZ53_08470	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
AJR22844.1	AJR24701.1	TZ53_02720	TZ53_14165	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
AJR22844.1	AJR25854.1	TZ53_02720	TZ53_21010	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AJR22844.1	AJR26269.1	TZ53_02720	TZ53_08365	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJR22844.1	AJR26275.1	TZ53_02720	TZ53_08795	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.670
AJR22844.1	AJR26453.1	TZ53_02720	TZ53_16345	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AJR22844.1	lptD	TZ53_02720	TZ53_14390	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.565
AJR22844.1	pal	TZ53_02720	TZ53_03460	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.622
AJR23089.1	AJR22844.1	TZ53_04215	TZ53_02720	OmpA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AJR23089.1	AJR23749.1	TZ53_04215	TZ53_08470	OmpA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.708
AJR23089.1	AJR25854.1	TZ53_04215	TZ53_21010	OmpA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
AJR23089.1	AJR26275.1	TZ53_04215	TZ53_08795	OmpA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.723