AJR22936.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR22936.1

Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)

Predicted Functional Partners:

AJR22935.1

0.860

AJR24831.1

0.568

AJR22934.1

0.541

AJR22439.1

0.475

AJR22986.1

0.474

AJR22440.1

0.459

AJR22892.1

0.431

AJR22598.1

0.414

AJR22712.1

0.413

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22439.1	AJR22440.1	TZ53_00180	TZ53_00185	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22439.1	AJR22598.1	TZ53_00180	TZ53_01140	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
AJR22439.1	AJR22712.1	TZ53_00180	TZ53_01840	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
AJR22439.1	AJR22892.1	TZ53_00180	TZ53_03040	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	RecX family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
AJR22439.1	AJR22936.1	TZ53_00180	TZ53_03315	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AJR22439.1	AJR22986.1	TZ53_00180	TZ53_03590	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
AJR22440.1	AJR22439.1	TZ53_00185	TZ53_00180	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22440.1	AJR22598.1	TZ53_00185	TZ53_01140	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
AJR22440.1	AJR22712.1	TZ53_00185	TZ53_01840	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
AJR22440.1	AJR22936.1	TZ53_00185	TZ53_03315	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
AJR22598.1	AJR22439.1	TZ53_01140	TZ53_00180	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
AJR22598.1	AJR22440.1	TZ53_01140	TZ53_00185	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
AJR22598.1	AJR22712.1	TZ53_01140	TZ53_01840	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AJR22598.1	AJR22936.1	TZ53_01140	TZ53_03315	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
AJR22712.1	AJR22439.1	TZ53_01840	TZ53_00180	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
AJR22712.1	AJR22440.1	TZ53_01840	TZ53_00185	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
AJR22712.1	AJR22598.1	TZ53_01840	TZ53_01140	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AJR22712.1	AJR22936.1	TZ53_01840	TZ53_03315	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AJR22892.1	AJR22439.1	TZ53_03040	TZ53_00180	RecX family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
AJR22892.1	AJR22936.1	TZ53_03040	TZ53_03315	RecX family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431