Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR26143.1AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)    
Predicted Functional Partners:
AJR22946.1
AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.699
AJR22945.1
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.668
AJR24842.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.568
AJR24321.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.564
AJR23071.1
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.502
AJR25803.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.486
AJR22532.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.483
AJR25251.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
AJR26550.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.478
AJR22572.1
MraZ protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MraZ family.
  
     0.462
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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