Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJR22961.1TolA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)    
Predicted Functional Partners:
AJR22960.1
Biopolymer transporter TolR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.926
tolB
Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.922
AJR22959.1
Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.920
AJR22958.1
Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.794
pal
Peptidoglycan-binding protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.764
AJR23621.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.757
AJR22461.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.736
AJR24864.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.690
AJR22610.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.684
AJR24449.1
Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.672
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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