Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AJR23005.1Sulfotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)    
Predicted Functional Partners:
AJR23003.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
AJR23001.1
Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AJR23002.1
ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AJR23004.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AJR23006.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.507
AJR23016.1
Sulfotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.497
AJR23000.1
Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.496
AJR23651.1
Inositol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.444
cysN
Adenylyltransferase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
       0.418
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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