AJR26157.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR26157.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)

Predicted Functional Partners:

AJR23054.1

0.952

AJR23535.1

0.795

AJR24423.1

0.591

AJR23605.1

0.490

AJR23533.1

0.458

AJR23607.1

0.417

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23054.1	AJR23533.1	TZ53_04020	TZ53_07140	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	0.446
AJR23054.1	AJR23605.1	TZ53_04020	TZ53_07635	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
AJR23054.1	AJR26157.1	TZ53_04020	TZ53_04025	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AJR23533.1	AJR23054.1	TZ53_07140	TZ53_04020	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
AJR23533.1	AJR23535.1	TZ53_07140	TZ53_07150	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
AJR23533.1	AJR26157.1	TZ53_07140	TZ53_04025	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
AJR23535.1	AJR23533.1	TZ53_07150	TZ53_07140	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	0.693
AJR23535.1	AJR23605.1	TZ53_07150	TZ53_07635	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
AJR23535.1	AJR26157.1	TZ53_07150	TZ53_04025	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
AJR23605.1	AJR23054.1	TZ53_07635	TZ53_04020	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
AJR23605.1	AJR23535.1	TZ53_07635	TZ53_07150	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
AJR23605.1	AJR23607.1	TZ53_07635	TZ53_07650	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
AJR23605.1	AJR26157.1	TZ53_07635	TZ53_04025	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
AJR23607.1	AJR23605.1	TZ53_07650	TZ53_07635	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
AJR23607.1	AJR26157.1	TZ53_07650	TZ53_04025	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AJR24423.1	AJR26157.1	TZ53_12480	TZ53_04025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
AJR26157.1	AJR23054.1	TZ53_04025	TZ53_04020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AJR26157.1	AJR23533.1	TZ53_04025	TZ53_07140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	0.458
AJR26157.1	AJR23535.1	TZ53_04025	TZ53_07150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
AJR26157.1	AJR23605.1	TZ53_04025	TZ53_07635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490