AJR23072.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR23072.1

DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)

Predicted Functional Partners:

AJR23073.1

0.975

AJR23075.1

0.870

AJR23074.1

0.807

AJR25390.1

0.756

AJR23275.1

0.747

AJR23076.1

0.726

AJR23077.1

0.698

AJR25176.1

0.683

AJR23280.1

0.676

AJR24177.1

0.673

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23072.1	AJR23073.1	TZ53_04130	TZ53_04135	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
AJR23072.1	AJR23074.1	TZ53_04130	TZ53_04140	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
AJR23072.1	AJR23075.1	TZ53_04130	TZ53_04145	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.870
AJR23072.1	AJR23076.1	TZ53_04130	TZ53_04150	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.726
AJR23072.1	AJR23077.1	TZ53_04130	TZ53_04155	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
AJR23072.1	AJR23275.1	TZ53_04130	TZ53_05395	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
AJR23072.1	AJR23280.1	TZ53_04130	TZ53_05420	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
AJR23072.1	AJR24177.1	TZ53_04130	TZ53_11005	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
AJR23072.1	AJR25176.1	TZ53_04130	TZ53_17015	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
AJR23072.1	AJR25390.1	TZ53_04130	TZ53_18305	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
AJR23073.1	AJR23072.1	TZ53_04135	TZ53_04130	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
AJR23073.1	AJR23074.1	TZ53_04135	TZ53_04140	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
AJR23073.1	AJR23075.1	TZ53_04135	TZ53_04145	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.726
AJR23073.1	AJR23076.1	TZ53_04135	TZ53_04150	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
AJR23073.1	AJR23077.1	TZ53_04135	TZ53_04155	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
AJR23073.1	AJR23275.1	TZ53_04135	TZ53_05395	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
AJR23073.1	AJR25390.1	TZ53_04135	TZ53_18305	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
AJR23074.1	AJR23072.1	TZ53_04140	TZ53_04130	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
AJR23074.1	AJR23073.1	TZ53_04140	TZ53_04135	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
AJR23074.1	AJR23075.1	TZ53_04140	TZ53_04145	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.935