AJR23073.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR23073.1

acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)

Predicted Functional Partners:

AJR23072.1

0.974

AJR26189.1

0.958

AJR23570.1

0.958

AJR23894.1

0.958

AJR25188.1

0.958

AJR25410.1

0.958

AJR25677.1

0.958

AJR23074.1

0.916

AJR25177.1

0.882

AJR23076.1

0.878

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23072.1	AJR23073.1	TZ53_04130	TZ53_04135	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AJR23072.1	AJR23074.1	TZ53_04130	TZ53_04140	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
AJR23072.1	AJR23076.1	TZ53_04130	TZ53_04150	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.730
AJR23073.1	AJR23072.1	TZ53_04135	TZ53_04130	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AJR23073.1	AJR23074.1	TZ53_04135	TZ53_04140	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
AJR23073.1	AJR23076.1	TZ53_04135	TZ53_04150	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
AJR23073.1	AJR23570.1	TZ53_04135	TZ53_07420	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.958
AJR23073.1	AJR23894.1	TZ53_04135	TZ53_09325	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AJR23073.1	AJR25177.1	TZ53_04135	TZ53_17020	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.882
AJR23073.1	AJR25188.1	TZ53_04135	TZ53_17085	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.958
AJR23073.1	AJR25410.1	TZ53_04135	TZ53_18405	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AJR23073.1	AJR25677.1	TZ53_04135	TZ53_19970	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AJR23073.1	AJR26189.1	TZ53_04135	TZ53_05545	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AJR23074.1	AJR23072.1	TZ53_04140	TZ53_04130	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
AJR23074.1	AJR23073.1	TZ53_04140	TZ53_04135	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
AJR23074.1	AJR23076.1	TZ53_04140	TZ53_04150	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AJR23074.1	AJR23570.1	TZ53_04140	TZ53_07420	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.867
AJR23074.1	AJR23894.1	TZ53_04140	TZ53_09325	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AJR23074.1	AJR25188.1	TZ53_04140	TZ53_17085	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.864
AJR23074.1	AJR25410.1	TZ53_04140	TZ53_18405	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933