Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR23101.1Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology. (590 aa)    
Predicted Functional Partners:
AJR22735.1
Protein involved in integration/excision of ICE Tn4371 family; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.716
AJR22751.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.652
AJR23176.1
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.631
AJR23720.1
Chromosome partitioning protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.619
AJR23102.1
RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.610
AJR22840.1
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.607
rsmG
16S rRNA methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.559
AJR23135.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.551
AJR23791.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.551
AJR25103.1
Plasmid partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.551
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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