AJR23102.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

AJR23102.1

RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (81 aa)

Predicted Functional Partners:

AJR23101.1

0.619

rpoC

0.488

rpoB

0.483

AJR24699.1

0.451

rpoZ

0.424

rpoA

0.424

AJR24441.1

0.411

AJR24458.1

0.411

AJR24949.1

0.411

AJR25082.1

0.403

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23101.1	AJR23102.1	TZ53_04275	TZ53_04280	Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
AJR23102.1	AJR23101.1	TZ53_04280	TZ53_04275	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
AJR23102.1	AJR24441.1	TZ53_04280	TZ53_12600	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
AJR23102.1	AJR24458.1	TZ53_04280	TZ53_12710	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
AJR23102.1	AJR24699.1	TZ53_04280	TZ53_14155	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
AJR23102.1	AJR24949.1	TZ53_04280	TZ53_15680	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
AJR23102.1	AJR25082.1	TZ53_04280	TZ53_16455	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Haloacid dehalogenase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	0.403
AJR23102.1	rpoA	TZ53_04280	TZ53_10860	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.424
AJR23102.1	rpoB	TZ53_04280	TZ53_13660	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.483
AJR23102.1	rpoC	TZ53_04280	TZ53_13655	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.488
AJR23102.1	rpoZ	TZ53_04280	TZ53_08445	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.424
AJR24441.1	AJR23102.1	TZ53_12600	TZ53_04280	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
AJR24458.1	AJR23102.1	TZ53_12710	TZ53_04280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
AJR24458.1	AJR24949.1	TZ53_12710	TZ53_15680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
AJR24699.1	AJR23102.1	TZ53_14155	TZ53_04280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
AJR24699.1	rpoB	TZ53_14155	TZ53_13660	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.444
AJR24699.1	rpoZ	TZ53_14155	TZ53_08445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.461
AJR24949.1	AJR23102.1	TZ53_15680	TZ53_04280	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
AJR24949.1	AJR24458.1	TZ53_15680	TZ53_12710	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
AJR25082.1	AJR23102.1	TZ53_16455	TZ53_04280	Haloacid dehalogenase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403