AJR23129.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AJR23129.1

Diamine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)

Predicted Functional Partners:

AJR23130.1

0.777

AJR26164.1

0.641

ispG

0.597

AJR25255.1

0.540

AJR26480.1

0.540

AJR23128.1

0.432

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23128.1	AJR23129.1	TZ53_04455	TZ53_04460	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diamine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
AJR23128.1	AJR23130.1	TZ53_04455	TZ53_04465	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
AJR23129.1	AJR23128.1	TZ53_04460	TZ53_04455	Diamine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
AJR23129.1	AJR23130.1	TZ53_04460	TZ53_04465	Diamine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
AJR23129.1	AJR25255.1	TZ53_04460	TZ53_17505	Diamine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
AJR23129.1	AJR26164.1	TZ53_04460	TZ53_04470	Diamine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
AJR23129.1	AJR26480.1	TZ53_04460	TZ53_17565	Diamine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
AJR23129.1	ispG	TZ53_04460	TZ53_04475	Diamine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.	0.597
AJR23130.1	AJR23128.1	TZ53_04465	TZ53_04455	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
AJR23130.1	AJR23129.1	TZ53_04465	TZ53_04460	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diamine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
AJR23130.1	AJR26164.1	TZ53_04465	TZ53_04470	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
AJR23130.1	ispG	TZ53_04465	TZ53_04475	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.	0.704
AJR25255.1	AJR23129.1	TZ53_17505	TZ53_04460	Antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diamine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
AJR26164.1	AJR23129.1	TZ53_04470	TZ53_04460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diamine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
AJR26164.1	AJR23130.1	TZ53_04470	TZ53_04465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
AJR26164.1	ispG	TZ53_04470	TZ53_04475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.	0.631
AJR26480.1	AJR23129.1	TZ53_17565	TZ53_04460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diamine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
ispG	AJR23129.1	TZ53_04475	TZ53_04460	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.	Diamine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
ispG	AJR23130.1	TZ53_04475	TZ53_04465	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
ispG	AJR26164.1	TZ53_04475	TZ53_04470	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631