AJR23148.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

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[Homology]

Score

AJR23148.1

Transcription elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)

Predicted Functional Partners:

AJR23147.1

0.709

AJR26374.1

0.696

AJR23153.1

0.631

hpf

0.626

AJR24345.1

0.616

AJR24327.1

0.608

AJR23144.1

0.590

AJR23145.1

0.590

AJR23146.1

0.590

AJR25706.1

0.565

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23144.1	AJR23145.1	TZ53_04545	TZ53_04550	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
AJR23144.1	AJR23146.1	TZ53_04545	TZ53_04555	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
AJR23144.1	AJR23147.1	TZ53_04545	TZ53_04560	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
AJR23144.1	AJR23148.1	TZ53_04545	TZ53_04565	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcription elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
AJR23144.1	hpf	TZ53_04545	TZ53_04540	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S30; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.	0.914
AJR23145.1	AJR23144.1	TZ53_04550	TZ53_04545	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
AJR23145.1	AJR23146.1	TZ53_04550	TZ53_04555	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR23145.1	AJR23147.1	TZ53_04550	TZ53_04560	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
AJR23145.1	AJR23148.1	TZ53_04550	TZ53_04565	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcription elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
AJR23145.1	hpf	TZ53_04550	TZ53_04540	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S30; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.	0.695
AJR23146.1	AJR23144.1	TZ53_04555	TZ53_04545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
AJR23146.1	AJR23145.1	TZ53_04555	TZ53_04550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR23146.1	AJR23147.1	TZ53_04555	TZ53_04560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.684
AJR23146.1	AJR23148.1	TZ53_04555	TZ53_04565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcription elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
AJR23146.1	hpf	TZ53_04555	TZ53_04540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S30; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.	0.742
AJR23147.1	AJR23144.1	TZ53_04560	TZ53_04545	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
AJR23147.1	AJR23145.1	TZ53_04560	TZ53_04550	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
AJR23147.1	AJR23146.1	TZ53_04560	TZ53_04555	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.684
AJR23147.1	AJR23148.1	TZ53_04560	TZ53_04565	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcription elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
AJR23147.1	hpf	TZ53_04560	TZ53_04540	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S30; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.	0.678