Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR26169.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)    
Predicted Functional Partners:
AJR23164.1
Secreted (periplasmic)-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.861
leuS
leucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.805
AJR23024.1
Outer membrane lipoprotein OmlA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
AJR24771.1
Pyrrolo-quinoline quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.757
AJR24067.1
RpsU-divergently transcribed; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.724
AJR24739.1
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.708
AJR23135.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.703
AJR24260.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.697
AJR25594.1
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.695
AJR23162.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.673
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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