AJR23170.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR23170.1

phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)

Predicted Functional Partners:

AJR24313.1

0.676

AJR24314.1

0.645

AJR26171.1

0.586

AJR23171.1

0.508

AJR25247.1

0.506

dld

0.489

AJR24704.1

0.489

AJR25025.1

0.489

AJR23920.1

0.457

AJR22850.1

0.455

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22850.1	AJR23170.1	TZ53_02755	TZ53_04705	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
AJR22850.1	AJR24704.1	TZ53_02755	TZ53_14190	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AJR22850.1	AJR25025.1	TZ53_02755	TZ53_16150	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AJR22850.1	AJR25247.1	TZ53_02755	TZ53_17435	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
AJR22850.1	dld	TZ53_02755	TZ53_00515	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lactate dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family.	0.413
AJR23170.1	AJR22850.1	TZ53_04705	TZ53_02755	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
AJR23170.1	AJR23171.1	TZ53_04705	TZ53_04715	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxymethylenebutenolidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
AJR23170.1	AJR23920.1	TZ53_04705	TZ53_09480	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
AJR23170.1	AJR24313.1	TZ53_04705	TZ53_11830	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
AJR23170.1	AJR24314.1	TZ53_04705	TZ53_11835	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
AJR23170.1	AJR24704.1	TZ53_04705	TZ53_14190	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AJR23170.1	AJR25025.1	TZ53_04705	TZ53_16150	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AJR23170.1	AJR25247.1	TZ53_04705	TZ53_17435	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
AJR23170.1	AJR26171.1	TZ53_04705	TZ53_04710	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
AJR23170.1	dld	TZ53_04705	TZ53_00515	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lactate dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family.	0.489
AJR23171.1	AJR23170.1	TZ53_04715	TZ53_04705	Carboxymethylenebutenolidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
AJR23171.1	AJR26171.1	TZ53_04715	TZ53_04710	Carboxymethylenebutenolidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
AJR23920.1	AJR23170.1	TZ53_09480	TZ53_04705	Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
AJR23920.1	AJR25247.1	TZ53_09480	TZ53_17435	Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
AJR24313.1	AJR23170.1	TZ53_11830	TZ53_04705	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676