AJR26172.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

AJR26172.1

ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)

Predicted Functional Partners:

AJR23180.1

0.999

AJR23181.1

0.999

AJR23179.1

0.899

AJR23182.1

0.721

AJR24286.1

0.655

AJR22440.1

0.629

AJR24132.1

0.615

AJR24457.1

0.598

bamA

0.591

AJR22424.1

0.530

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22424.1	AJR26172.1	TZ53_00100	TZ53_04770	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
AJR22440.1	AJR23179.1	TZ53_00185	TZ53_04755	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AJR22440.1	AJR24132.1	TZ53_00185	TZ53_10725	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJR22440.1	AJR24286.1	TZ53_00185	TZ53_11680	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-arabinose 5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily.	0.432
AJR22440.1	AJR26172.1	TZ53_00185	TZ53_04770	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
AJR22440.1	bamA	TZ53_00185	TZ53_14985	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.460
AJR23179.1	AJR22440.1	TZ53_04755	TZ53_00185	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AJR23179.1	AJR23180.1	TZ53_04755	TZ53_04760	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
AJR23179.1	AJR23181.1	TZ53_04755	TZ53_04765	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AJR23179.1	AJR23182.1	TZ53_04755	TZ53_04775	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712
AJR23179.1	AJR26172.1	TZ53_04755	TZ53_04770	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
AJR23180.1	AJR23179.1	TZ53_04760	TZ53_04755	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
AJR23180.1	AJR23181.1	TZ53_04760	TZ53_04765	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR23180.1	AJR23182.1	TZ53_04760	TZ53_04775	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
AJR23180.1	AJR24286.1	TZ53_04760	TZ53_11680	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-arabinose 5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily.	0.473
AJR23180.1	AJR26172.1	TZ53_04760	TZ53_04770	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR23181.1	AJR23179.1	TZ53_04765	TZ53_04755	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AJR23181.1	AJR23180.1	TZ53_04765	TZ53_04760	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR23181.1	AJR23182.1	TZ53_04765	TZ53_04775	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
AJR23181.1	AJR24286.1	TZ53_04765	TZ53_11680	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-arabinose 5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily.	0.542