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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR23194.1Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology. (497 aa)    
Predicted Functional Partners:
AJR25760.1
Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.861
AJR23705.1
UDP-galactopyranose mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.779
AJR24464.1
Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.759
AJR25949.1
CDP-paratose 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.749
AJR24925.1
Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.740
AJR24922.1
CelD-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.707
AJR24931.1
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.681
AJR24926.1
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.676
AJR24932.1
Transmembrane protein EpsH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.625
AJR25075.1
Protein tyrosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.619
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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