AJR23217.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR23217.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)

Predicted Functional Partners:

AJR23828.1

0.893

AJR25010.1

0.876

AJR25009.1

0.865

AJR25452.1

0.784

ssuB

0.769

AJR25011.1

0.764

AJR26283.1

0.745

AJR23819.1

0.743

AJR23833.1

0.741

AJR23501.1

0.729

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23217.1	AJR23501.1	TZ53_04995	TZ53_06925	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.729
AJR23217.1	AJR23819.1	TZ53_04995	TZ53_08875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
AJR23217.1	AJR23828.1	TZ53_04995	TZ53_08930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
AJR23217.1	AJR23833.1	TZ53_04995	TZ53_08955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
AJR23217.1	AJR25009.1	TZ53_04995	TZ53_16020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
AJR23217.1	AJR25010.1	TZ53_04995	TZ53_16025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
AJR23217.1	AJR25011.1	TZ53_04995	TZ53_16030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
AJR23217.1	AJR25452.1	TZ53_04995	TZ53_18665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bicarbonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
AJR23217.1	AJR26283.1	TZ53_04995	TZ53_09190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
AJR23217.1	ssuB	TZ53_04995	TZ53_08935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.	0.769
AJR23501.1	AJR23217.1	TZ53_06925	TZ53_04995	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.729
AJR23501.1	AJR23819.1	TZ53_06925	TZ53_08875	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
AJR23501.1	AJR23828.1	TZ53_06925	TZ53_08930	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.593
AJR23501.1	AJR23833.1	TZ53_06925	TZ53_08955	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
AJR23501.1	AJR25010.1	TZ53_06925	TZ53_16025	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.601
AJR23501.1	AJR25011.1	TZ53_06925	TZ53_16030	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AJR23501.1	AJR26283.1	TZ53_06925	TZ53_09190	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
AJR23501.1	ssuB	TZ53_06925	TZ53_08935	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.	0.858
AJR23819.1	AJR23217.1	TZ53_08875	TZ53_04995	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
AJR23819.1	AJR23501.1	TZ53_08875	TZ53_06925	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822