AJR23280.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR23280.1

Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)

Predicted Functional Partners:

AJR23279.1

0.978

AJR26189.1

0.952

AJR23570.1

0.952

AJR23894.1

0.952

AJR25188.1

0.952

AJR25410.1

0.952

AJR25677.1

0.952

AJR23278.1

0.919

AJR24176.1

0.907

AJR25177.1

0.899

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23278.1	AJR23279.1	TZ53_05410	TZ53_05415	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AJR23278.1	AJR23280.1	TZ53_05410	TZ53_05420	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
AJR23279.1	AJR23278.1	TZ53_05415	TZ53_05410	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AJR23279.1	AJR23280.1	TZ53_05415	TZ53_05420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
AJR23279.1	AJR25177.1	TZ53_05415	TZ53_17020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
AJR23280.1	AJR23278.1	TZ53_05420	TZ53_05410	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
AJR23280.1	AJR23279.1	TZ53_05420	TZ53_05415	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
AJR23280.1	AJR23570.1	TZ53_05420	TZ53_07420	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.952
AJR23280.1	AJR23894.1	TZ53_05420	TZ53_09325	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AJR23280.1	AJR24176.1	TZ53_05420	TZ53_11000	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
AJR23280.1	AJR25177.1	TZ53_05420	TZ53_17020	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
AJR23280.1	AJR25188.1	TZ53_05420	TZ53_17085	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.952
AJR23280.1	AJR25410.1	TZ53_05420	TZ53_18405	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AJR23280.1	AJR25677.1	TZ53_05420	TZ53_19970	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AJR23280.1	AJR26189.1	TZ53_05420	TZ53_05545	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AJR23570.1	AJR23280.1	TZ53_07420	TZ53_05420	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AJR23570.1	AJR23894.1	TZ53_07420	TZ53_09325	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
AJR23570.1	AJR25188.1	TZ53_07420	TZ53_17085	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.508
AJR23570.1	AJR25410.1	TZ53_07420	TZ53_18405	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
AJR23570.1	AJR25677.1	TZ53_07420	TZ53_19970	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957