AJR23309.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

AJR23309.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)

Predicted Functional Partners:

AJR26059.1

0.743

AJR25355.1

0.735

AJR22492.1

0.733

AJR26208.1

0.652

AJR23289.1

0.629

AJR26105.1

0.622

AJR23608.1

0.587

AJR23298.1

0.581

AJR23072.1

0.566

AJR25390.1

0.562

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22492.1	AJR23289.1	TZ53_00495	TZ53_05490	Biphenyl 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
AJR22492.1	AJR23298.1	TZ53_00495	TZ53_05535	Biphenyl 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AJR22492.1	AJR23309.1	TZ53_00495	TZ53_05615	Biphenyl 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733
AJR22492.1	AJR23608.1	TZ53_00495	TZ53_07655	Biphenyl 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
AJR22492.1	AJR25355.1	TZ53_00495	TZ53_18125	Biphenyl 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
AJR22492.1	AJR26105.1	TZ53_00495	TZ53_02160	Biphenyl 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
AJR22492.1	AJR26208.1	TZ53_00495	TZ53_05930	Biphenyl 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.448
AJR23072.1	AJR23309.1	TZ53_04130	TZ53_05615	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
AJR23072.1	AJR25390.1	TZ53_04130	TZ53_18305	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
AJR23289.1	AJR22492.1	TZ53_05490	TZ53_00495	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biphenyl 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
AJR23289.1	AJR23309.1	TZ53_05490	TZ53_05615	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
AJR23289.1	AJR25355.1	TZ53_05490	TZ53_18125	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
AJR23289.1	AJR25390.1	TZ53_05490	TZ53_18305	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
AJR23289.1	AJR26059.1	TZ53_05490	TZ53_00435	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biphenyl 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
AJR23298.1	AJR22492.1	TZ53_05535	TZ53_00495	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biphenyl 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AJR23298.1	AJR23309.1	TZ53_05535	TZ53_05615	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
AJR23298.1	AJR25355.1	TZ53_05535	TZ53_18125	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
AJR23298.1	AJR25390.1	TZ53_05535	TZ53_18305	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
AJR23298.1	AJR26059.1	TZ53_05535	TZ53_00435	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biphenyl 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
AJR23309.1	AJR22492.1	TZ53_05615	TZ53_00495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biphenyl 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733