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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR23346.1Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology. (684 aa)    
Predicted Functional Partners:
AJR23345.1
DNA relaxase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.949
AJR25331.1
DNA relaxase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.786
AJR23347.1
CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.782
AJR24199.1
Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.696
AJR24754.1
Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.690
AJR22736.1
Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.619
AJR22786.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.595
AJR23034.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.582
AJR25600.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.521
AJR22741.1
Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.514
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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